www.unimi.it bioscienze.bio Dipartimento Bioscienze

FotoPietro Mandreoli
Email: pietro.mandreoli@unimi.it
Cicle: XXXV A.Y. 2019 - 2020
Supervisor: Federico Zambelli
Title: Development and implementation of cloud-oriented bioinformatic tools and workflows … read more

External links: ORCID


Curriculum vitae: >>>


PhD Seminars:
Date Title Speakers
10/02/2019 Icell8 cx automation Platform Pierluigi Tenca, Alessandro Abramo
22/11/2019 Title: Introducing Human Technopole Ian Mattaj FRs,FmedSci
22/11/2019 The cell Biology of Genetics Arp Schnittger
27/11/2019 Elixir innovation and SME forum (full day workshop) (organizer) Angelo facchiano
28/11/2019 Unveiling a rare Trascriptional state exposes mechanism of resistance to endocrine therapy Dr. Iros Barozzi
23/01/2020 The role of MIR-182 in zebrafish heart development a tbx5-controlled miRNA in holt-oral syndrome Dr. Elena Guzzolino
24/01/2020 Rare ribosomopathies a lesson in cancer biogenesis Irma Dianziani
24/01/2020 Painting the regulatory landscape of neural stem cells Dr. Giulio Pavesi
14/02/2020 Unveiling the role of DNA repetitive elements in Human Genome Plasticity Dr. Beatrice Bodega
22/04/2020 Computational structural Biology at UNIMI Camilloni Claudio
06/05/2020 Architetture and Dynamics of macromolecule revealed by Cryo-Electron microscopy Paolo Swuec
28/05/2020 Covid-19 come si insegue e sconfigge un virus (organizer) Elena Cattaneo
25/10/2020 FAM46C AND FNDC3A ARE MULTIPLE MYELOMA TUMOR SUPPRESSORS THAT ACT IN CONCERT TO IMPAIR CLEARING OF PROTEIN AGGREGATES AND AUTOPHAGY Nicola Manfrini
06/01/2021 Workshop Bring your own code to the elixir software Management plans Elixir-IT community
03/02/2021 Unveiling cardiac diseases pathophysiology IPSC as a New Tool Federica Giannetti
03/03/2021 Advanced Galaxy Workflow features Marius van den Beek
10/03/2021 Processing thousand of datasets simultaneously Wolfgang Maier
17/03/2021 Galaxy bridge to Jupyter notebooks and Rstudio Helena Rasche
05/05/2021 The Pioneer Transcription factor FOXA4 calibrates the pre mrna alternative splicing landscape of human prostate cancer Matteo Cereda
03/06/2021 workshop strengthening the integration of Galaxy in the tools ecosystem Galaxy community
16/06/2021 Hashicorp Vault introduction Hashicorp

PhD Courses:
Starting Date Ending Date Title Place
17/06/2020 17/06/2020 Deploy and administrate infrastruttures with Terraform on AWS Online
17/07/2020 17/07/2020 Processing of single cell RNA-seq data with Galaxy Online
18/07/2020 18/07/2020 fit your tools into any platform with Conda and Biocontainers Online
28/06/2021 02/07/2021 Galaxy training week developer track Online

Conferences / Workshops:
Starting Date Ending Date Title Place
06/12/2019 06/12/2019 ELIXIR - EXCELERATE All Hands meeting Lisbona
25/02/2021 27/02/2021 DBS workshop DBS workshop, workshop dipartimento di eccellenza
01/06/2021 11/06/2021 ELIXIR All Hands 2021- Online
06/07/2021 08/07/2021 Galaxy Community Conference 2021 Online
10/07/2021 10/08/2021 PhD Workshop 2021 UNIMI Milan Italy

Publications:

 Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service
Tangaro, M.A., Mandreoli, P., Chiara, M. et al.
bmc-bioinformatics

 "Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures
Marco Antonio Tangaro, Giacinto Donvito, Marica Antonacci, Matteo Chiara, Pietro Mandreoli, Graziano Pesole, Federico Zambelli
GigaScience

 VINYL: Variant prIoritizatioN bY survivaL analysis
Matteo Chiara, Pietro Mandreoli, Marco Antonio Tangaro, Anna Maria D’Erchia, Sandro Sorrentino, Cinzia Forleo, David S. Horner, Federico Zambelli, Graziano Pesole
Bioinformatics

 CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes
Matteo Chiara,Federico Zambelli, Marco Antonio Tangaro, Pietro Mandreoli, David S. Horner and Graziano Pesole.
Bioinformatics

 ”Ascan: a novel method for the study of inter-individual allele specific expression
Federico Zambelli, Matteo Chiara, Erika Ferrandi, Pietro Mandreoli, Marco Antonio Tangaro, Giulio Pavesi, Graziano Pesole
Journal of molecular biology



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