Pietro Mandreoli
Email: pietro.mandreoli@unimi.it
Cicle: XXXV A.Y. 2019 - 2020
Supervisor: Federico Zambelli
Title: Development and implementation of cloud-oriented bioinformatic tools and workflows … read more

External links: ORCID


Curriculum vitae: >>>


PhD Seminars:

Date	Title	Speakers
10/02/2019	Icell8 cx automation Platform	Pierluigi Tenca, Alessandro Abramo
22/11/2019	Title: Introducing Human Technopole	Ian Mattaj FRs,FmedSci
22/11/2019	The cell Biology of Genetics	Arp Schnittger
27/11/2019	Elixir innovation and SME forum (full day workshop)	(organizer) Angelo facchiano
28/11/2019	Unveiling a rare Trascriptional state exposes mechanism of resistance to endocrine therapy	Dr. Iros Barozzi
23/01/2020	The role of MIR-182 in zebrafish heart development a tbx5-controlled miRNA in holt-oral syndrome	Dr. Elena Guzzolino
24/01/2020	Rare ribosomopathies a lesson in cancer biogenesis	Irma Dianziani
24/01/2020	Painting the regulatory landscape of neural stem cells	Dr. Giulio Pavesi
14/02/2020	Unveiling the role of DNA repetitive elements in Human Genome Plasticity	Dr. Beatrice Bodega
22/04/2020	Computational structural Biology at UNIMI	Camilloni Claudio
06/05/2020	Architetture and Dynamics of macromolecule revealed by Cryo-Electron microscopy	Paolo Swuec
28/05/2020	Covid-19 come si insegue e sconfigge un virus	(organizer) Elena Cattaneo
25/10/2020	FAM46C AND FNDC3A ARE MULTIPLE MYELOMA TUMOR SUPPRESSORS THAT ACT IN CONCERT TO IMPAIR CLEARING OF PROTEIN AGGREGATES AND AUTOPHAGY	Nicola Manfrini
06/01/2021	Workshop Bring your own code to the elixir software Management plans	Elixir-IT community
03/02/2021	Unveiling cardiac diseases pathophysiology IPSC as a New Tool	Federica Giannetti
03/03/2021	Advanced Galaxy Workflow features	Marius van den Beek
10/03/2021	Processing thousand of datasets simultaneously	Wolfgang Maier
17/03/2021	Galaxy bridge to Jupyter notebooks and Rstudio	Helena Rasche
05/05/2021	The Pioneer Transcription factor FOXA4 calibrates the pre mrna alternative splicing landscape of human prostate cancer	Matteo Cereda
03/06/2021	workshop strengthening the integration of Galaxy in the tools ecosystem	Galaxy community
16/06/2021	Hashicorp Vault introduction	Hashicorp

PhD Courses:

Starting Date	Ending Date	Title	Place
17/06/2020	17/06/2020	Deploy and administrate infrastruttures with Terraform on AWS	Online
17/07/2020	17/07/2020	Processing of single cell RNA-seq data with Galaxy	Online
18/07/2020	18/07/2020	fit your tools into any platform with Conda and Biocontainers	Online
28/06/2021	02/07/2021	Galaxy training week developer track	Online

Conferences / Workshops:

Starting Date	Ending Date	Title	Place
06/12/2019	06/12/2019	ELIXIR - EXCELERATE All Hands meeting	Lisbona
25/02/2021	27/02/2021	DBS workshop	DBS workshop, workshop dipartimento di eccellenza
01/06/2021	11/06/2021	ELIXIR All Hands 2021-	Online
06/07/2021	08/07/2021	Galaxy Community Conference 2021	Online
10/07/2021	10/08/2021	PhD Workshop 2021 UNIMI	Milan Italy

Publications:

 Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service
Tangaro, M.A., Mandreoli, P., Chiara, M. et al.
bmc-bioinformatics

 "Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures
Marco Antonio Tangaro, Giacinto Donvito, Marica Antonacci, Matteo Chiara, Pietro Mandreoli, Graziano Pesole, Federico Zambelli
GigaScience

 VINYL: Variant prIoritizatioN bY survivaL analysis
Matteo Chiara, Pietro Mandreoli, Marco Antonio Tangaro, Anna Maria D’Erchia, Sandro Sorrentino, Cinzia Forleo, David S. Horner, Federico Zambelli, Graziano Pesole
Bioinformatics

 CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes
Matteo Chiara,Federico Zambelli, Marco Antonio Tangaro, Pietro Mandreoli, David S. Horner and Graziano Pesole.
Bioinformatics

 ”Ascan: a novel method for the study of inter-individual allele specific expression
Federico Zambelli, Matteo Chiara, Erika Ferrandi, Pietro Mandreoli, Marco Antonio Tangaro, Giulio Pavesi, Graziano Pesole
Journal of molecular biology