Daniele Traversa
Email: daniele.traversa@unimi.it
Cicle: XXXVIII A.Y. 2022 - 2023
Supervisor: Matteo Chiara
Title: Bioinformatics tools for variant prioritization in precision medicine … read more

PhD Seminars:

Date	Title	Speakers
21/10/2022	Combining single cell and spatial transcriptomics to explore tissue architecture in plant development	Rüdiger Simon
28/10/2022	Long noncoding RNA functions in healthy and diseased cell	Rory Johnson
17/01/2023	Development and implementation of cloud-oriented bioinformatic services (Esame finale Pietro Mandreoli)	Pietro Mandreoli
31/01/2023	MITOCHONDRIA NETWORK AS A CENTRAL HUB IN THE CONTROL OF PROTEOSTASIS AND AGEING	Marco Sandri
09/02/2023	How HIV uses its capsid to promote infection and evade innate immunity	Guido Papa
22/02/2023	Investigating and translating genomic evidence for public health response to SARS-CoV-2 (Inside SARS-CoV-2)	Paola Stefanelli, Anant Mohan, Flavia Riccardo, Sankar Bhattacharyya, Rajesh Pandey, Angela Di Martino, Graziano Pesole, Matteo Chiara
17/03/2023	Oxford Nanopore sequencing technology	Angelica Vittori, Barbara Ottolini, Francesco Nicassio, Lavinia Grasso, Marzia Rossato, Dario Besusso, Valeria Ranzani
16/11/2023	Less Stress with MicroRNAs	Amy Pasquinelli
24/11/2023	Molecular evolution and host adaptation of human-infecting dsDNA viruses	Dr.ssa Manuela Sironi
04/11/2024	Mitochondria in Health and Disease: Bridging Molecular Sciences and Therapeutic Breakthroughs	Carlo Viscomi
08/11/2024	AA amyloidosis: a severe disease but also a model for studying amyloid-related questions	Gunilla Westermark
06/12/2024	Structural basis of lipopolysaccharide biosynthesis and modification	Filippo Mancia
09/01/2025	Decoding the regulatory interplay of RNA-binding proteins and cis-elements in cancer	Erik Dassi
09/01/2025	FUNCTIONAL STUDY OF THE NONCODING REGULOME OF THE NUCLEAR FACTOR Y IN HUMAN CANCER (esame finale Giulia Pagani)	Giulia Pagani

PhD Courses:

Starting Date	Ending Date	Title	Place
08/11/2022	10/11/2022	GENOMICS FOR ECOLOGICAL AND EVOLUTIONARY STUDIES: FROM DNA SEQUENCING TO DATA ANALYSIS	Dipartimento di Bioscienze - Unimi
09/01/2023	31/01/2023	Biostatistics	Dipartimento di Bioscienze - Unimi
13/02/2023	20/02/2023	MOLECULAR AND CELLULAR BIOLOGY: METHODS AND COMUNICATION OF RESULTS	Dipartimento di Bioscienze - Unimi
07/03/2023	08/03/2023	Introduction to the "Open Science"	Online
03/04/2023	04/04/2023	Open Science: riviste predatorie, pre-print e open review	Online
02/05/2023	03/05/2023	Open Science: Dati Fair	Online
13/06/2023	13/07/2023	Comunicazione e nuovi media	Online
28/06/2023	28/06/2023	Lezione propedeutica base su IP e brevetti	Online
03/07/2023	04/07/2023	Fondamenti di Academic Writing	Online
18/09/2023	19/09/2023	Language coaching - Interpersonal Skills: Presentation Skills	Online
19/02/2024	23/02/2024	Academic writing: research paper	Online
19/02/2024	23/02/2024	Educazione finanziaria e sostenibilità ambientale	Dipartimento di Bioscienze - Unimi
19/02/2024	23/02/2024	Behind the scenes of a peer reviewed journal	Dipartimento di Bioscienze - Unimi
19/02/2024	23/02/2024	Preparazione di un piano di disseminazione per un progetto di ricerca	Dipartimento di Bioscienze - Unimi
19/02/2024	23/02/2024	La sostenibilità integrata, un caso studio	Dipartimento di Bioscienze - Unimi
19/02/2024	23/02/2024	Exploitation by means of business creation: spin-off and entrepreneurship from an academic point of view	Online
19/02/2024	23/02/2024	La Proprietà Intellettuale e la tutela brevettuale	Online
19/02/2024	23/02/2024	La valutazione della Sostenibilità integrata per la global health:	Online
19/02/2024	23/02/2024	Grantmanship	Online
19/02/2024	23/02/2024	The purpose of a phd in the knowledge economy	Online
19/02/2024	23/02/2024	Teaching and learning	Online
20/06/2024	21/06/2024	BIG-DATA IN MOLECULAR BIOLOGY: FROM EXPERIMENTAL DESIGN TO MOLECULAR FUNCTION	Dipartimento di Bioscienze - Unimi

Conferences / Workshops:

Starting Date	Ending Date	Title	Place
08/05/2023	08/05/2023	1st European Cancer Dependency Map Symposium	Human Technopole, Milan
25/03/2024	27/04/2024	National PhD meeting 2024 organized by SIBBM and ABCD	Bologna, Italy
08/04/2024	10/04/2024	Human Genome Meeting 2024 (HUGO)	Rome, Italy
28/05/2024	30/05/2024	PhD students meeting 2024	Istituto Mario Negri, Milan, Italy
12/06/2024	15/06/2024	BITS annual meeting 2024	Trento, Italy

Posters:

Date	Title	Place	File
26/03/2024	Oral presentation - SCALT: automatic identification of cell types from single-cell RNA sequencing data	National PhD meeting 2024 (SIBBM & ABCD) - Bologna, Italy
09/04/2024	Poster presentation - SCALT: automatic identification of cell types from single-cell RNA sequencing data	HUGO 2024 - Human Genome Meeting 2024, Rome, Italy
30/05/2024	Oral presentation - SCALT: automatic identification of cell types from single-cell RNA sequencing data	PhD Meeting Istituto Mario Negri, Milan, Italy
14/06/2024	Poster presentation - SCALT: automatic identification of cell types from single-cell RNA sequencing data	BITS annual meeting 2024, Trento, Italy

Publications:

 Integrating single nuclei and bulk RNA sequencing in rice shoot apical meristems uncovers candidate early floral transition gene networks
Daniele Traversa, Giulio Vicentini, Paolo Korwin Krukowski, Lucio Conti, Matteo Chiara, Vittoria Brambilla
Plant Reprod 38

 De Novo Assembly of the Polyhydroxybutyrate (PHB) Producer Azohydromonas lata Strain H1 Genome and Genomic Analysis of PHB Production Machinery
Daniele Traversa, Carlo Pazzani, Pietro D’Addabbo, Lucia Trisolini, Matteo Chiara, Marta Oliva, Angelo Marzella, Camilla Mandorino, Carla Calia, Guglielmina Chimienti, Caterina Manzari, Graziano Pesole, Maria Scrascia
Microorganisms