www.unimi.it bioscienze.bio Dipartimento Bioscienze

FotoFran Bacic Toplek
Email: fran.bacic@unimi.it
Cicle: XXXVIII A.Y. 2022 - 2023
Supervisor: Carlo Camilloni
Title: Molecular modelling of biomolecular self-assembly processes … read more

PhD Seminars:
Date Title Speakers
21/10/2022 Combining single cell and spatial transcriptomics to explore tissue architecture in plant development Prof. Rüdiger Simon
11/11/2022 Coordination of bacterial cell envelope biogenesis Prof. Waldemar Vollmer
25/11/2022 Study of the effects of using different water-saving strategies on plant growth, yield and photosynthesis in different crops grown under Mediterranean climate conditions in northeastern Morocco. Prof. Kamal Aberkani
24/01/2023 Computational Approaches to Protein Condensates Peter Wolynes, Gerhard Hummer, Rosana Collepardo-Guevara and Monika Fuxreiter
27/01/2023 Twisting the boundaries: Role of DNA topoisomerases at the nuclear lamina Dr. Stefano Manzo
31/01/2023 MITOCHONDRIA NETWORK AS A CENTRAL HUB IN THE CONTROL OF PROTEOSTASIS AND AGEING Prof Marco Sandri
09/02/2023 How HIV uses its capsid to promote infection and evade innate immunity Dr. Guido Papa
21/03/2023 Neuronal differentiation and neurodegeneration: the dual role of sphingolipids Emma Carsana
05/04/2023 HAEMATOPOIETICSTEM/PROGENITOR CELL-GENE THERAPY IN INBORN ERRORS OF METABOLISM Maria Ester Bernardo
06/04/2023 Viscoelasticity of folded protein and is it related to protein disorder? Shivprasad Patil
06/04/2023 Intrinsically disordered proteins as a biological weapon: The curious case of the velvet worm slime Ali Miserez
21/04/2023 Computational modeling: a quantitative tool to investigate cardiac cellular electrophysiology Prof Stefano Severi
04/05/2023 Prediction of phase separation of IDRs and coiled-coil domains Dr. Loren Hough
04/05/2023 The structural architecture of an α-synuclein toxic oligomer Prof. Salvador Ventura
15/05/2023 Understanding biomolecular behaviour with mass photometry Dr. Perla Vega Dominguez
01/06/2023 From sequence to function in IDRs Agnes Toth-Petroczy
04/06/2023 Molecular and functional heterogeneity in dorsal and ventral oligodendrocyte progenitor cells of the mouse forebrain in response to DNA damage Prof. Enrica Boda
23/06/2023 The cold side of connectivity. A journey in the Southern Ocean with Antarctic fish Prof.ssa Chiara Papetti
30/06/2023 Fighting fungal disease in eggplant: from allied source of resistance to the gene Dott.ssa Laura Toppino
14/07/2023 Bacterial exoskeletons and where to find them: the Bacillus anthracis case Dott.ssa Antonella Fioravanti
20/10/2023 Chaperone regulation of the protein condensation and aggregation continuum in Alzheimer's disease Prof Claudio Gomes
23/10/2023 Identification of new targets to promote cardiac regeneration and prevent cardiac fibrosis Dr.ssa Paola Cattaneo
03/11/2023 Conformational ensembles of the human intrinsically disordered proteome Prof. Kresten Lindorff-Larsen
02/02/2024 What the structures of amyloids teach us about amyloid pathology Prof Joost Schymkowitz
05/06/2024 COMPUTATIONAL INSIGHTS INTO NEURAL FUNCTIONS FROM CELL CULTURE NETWORKS Dr. Thierry Nieus
06/06/2024 The molecular interactions that shape tau in disease Lukasz Joachimiak
06/06/2024 RNA-RBP condensates - A tango to organize the intracellular milleu Shovamayee Maharana

PhD Courses:
Starting Date Ending Date Title Place
09/01/2023 31/01/2023 Biostatistics for Molecular and Cellular Biology Department of Biosciences - UniMi
07/02/2023 08/02/2023 Introduzione all’ Open Science Online
13/02/2023 15/02/2023 THE DRUG DISCOVERY PROCESS: FROM TARGET TO LEAD IDENTIFICATION ROOM C04, Via Mangiagalli 25
03/04/2023 04/04/2023 Open Science: riviste predatorie, pre-print e open review Online
17/05/2023 18/05/2023 Open Science: Dati Fair Online
28/06/2023 28/06/2023 Lezione propedeutica base su IP e brevetti Online
10/07/2023 11/07/2023 Fondamenti di Academic Writing Online
20/11/2023 24/11/2023 CINECA: Advanced School on HPC Computing with GPU Accelerators Online
22/02/2024 22/02/2024 La valutazione della Sostenibilità Integrata per la Global Health Online
22/02/2024 22/02/2024 The purpose of a phd in the knowledge economy Online
22/02/2024 22/02/2024 The Art of Grantmanship Online
22/02/2024 22/02/2024 La Proprietà Intellettuale e la tutela brevettuale (percorso base) Online

Conferences / Workshops:
Starting Date Ending Date Title Place
23/03/2023 23/03/2023 One-day workshop on last advancements in protein aggregation from both computational and experimental point of view Department of Biosciences - UniMi
24/03/2023 24/03/2023 4EU+ Training session: Open Access and Open licences 4EU+ Training session: Open Access and Open licences
27/03/2023 29/03/2023 CINECA: Introduction to Scientific and Technical Computing in C Online
06/12/2023 09/12/2023 EMBO: Computational structural biology EMBL Advanced Training Centre - Heidelberg (Germany)

Publications:

 Multi-eGO: An in silico lens to look into protein aggregation kinetics at atomic resolution
Emanuele Scalone, Luca Broggini, Cristina Visentin, Davide Erba, Fran Bačić Toplek, Kaliroi Peqini, Sara Pellegrino, Stefano Ricagno, Cristina Paissoni, Carlo Camilloni
Proceedings of the National Academy of Sciences

 Multi-eGO: Model Improvements toward the Study of Complex Self-Assembly Processes
Bačić Toplek, F., Scalone, E., Stegani, B., Paissoni, C., Capelli, R., & Camilloni, C.
Journal of Chemical Theory and Computation



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