Fran Bacic Toplek
Email:
fran.bacic@unimi.it
Cicle:
XXXVIII A.Y.
2022 - 2023
Supervisor:
Carlo Camilloni
Title:
Molecular modelling of biomolecular self-assembly processes … read more
PhD Seminars:
| Date |
Title |
Speakers |
| 21/10/2022 |
Combining single cell and spatial transcriptomics to explore tissue architecture in plant development |
Prof. Rüdiger Simon |
| 11/11/2022 |
Coordination of bacterial cell envelope biogenesis |
Prof. Waldemar Vollmer |
| 25/11/2022 |
Study of the effects of using different water-saving strategies on plant growth, yield and photosynthesis in different crops grown under Mediterranean climate conditions in northeastern Morocco. |
Prof. Kamal Aberkani |
| 24/01/2023 |
Computational Approaches to Protein Condensates |
Peter Wolynes, Gerhard Hummer, Rosana Collepardo-Guevara and Monika Fuxreiter |
| 27/01/2023 |
Twisting the boundaries: Role of DNA topoisomerases at the nuclear lamina |
Dr. Stefano Manzo |
| 31/01/2023 |
MITOCHONDRIA NETWORK AS A CENTRAL HUB IN THE CONTROL OF PROTEOSTASIS AND AGEING |
Prof Marco Sandri |
| 09/02/2023 |
How HIV uses its capsid to promote infection and evade innate immunity |
Dr. Guido Papa |
| 21/03/2023 |
Neuronal differentiation and neurodegeneration: the dual role of sphingolipids |
Emma Carsana |
| 05/04/2023 |
HAEMATOPOIETICSTEM/PROGENITOR CELL-GENE THERAPY IN INBORN ERRORS OF METABOLISM |
Maria Ester Bernardo |
| 06/04/2023 |
Viscoelasticity of folded protein and is it related to protein disorder? |
Shivprasad Patil |
| 06/04/2023 |
Intrinsically disordered proteins as a biological weapon: The curious case of the velvet worm slime |
Ali Miserez |
| 21/04/2023 |
Computational modeling: a quantitative tool to investigate cardiac cellular electrophysiology |
Prof Stefano Severi |
| 04/05/2023 |
Prediction of phase separation of IDRs and coiled-coil domains |
Dr. Loren Hough |
| 04/05/2023 |
The structural architecture of an α-synuclein toxic oligomer |
Prof. Salvador Ventura |
| 15/05/2023 |
Understanding biomolecular behaviour with mass photometry |
Dr. Perla Vega Dominguez |
| 01/06/2023 |
From sequence to function in IDRs |
Agnes Toth-Petroczy |
| 04/06/2023 |
Molecular and functional heterogeneity in dorsal and ventral oligodendrocyte progenitor cells of the mouse forebrain in response to DNA damage |
Prof. Enrica Boda |
| 23/06/2023 |
The cold side of connectivity. A journey in the Southern Ocean with Antarctic fish |
Prof.ssa Chiara Papetti |
| 30/06/2023 |
Fighting fungal disease in eggplant: from allied source of resistance to the gene |
Dott.ssa Laura Toppino |
| 14/07/2023 |
Bacterial exoskeletons and where to find them: the Bacillus anthracis case |
Dott.ssa Antonella Fioravanti |
| 20/10/2023 |
Chaperone regulation of the protein condensation and aggregation continuum in Alzheimer's disease |
Prof Claudio Gomes |
| 23/10/2023 |
Identification of new targets to promote cardiac regeneration and prevent cardiac fibrosis |
Dr.ssa Paola Cattaneo |
| 03/11/2023 |
Conformational ensembles of the human intrinsically disordered proteome |
Prof. Kresten Lindorff-Larsen |
| 02/02/2024 |
What the structures of amyloids teach us about amyloid pathology |
Prof Joost Schymkowitz |
| 05/06/2024 |
COMPUTATIONAL INSIGHTS INTO NEURAL FUNCTIONS FROM CELL CULTURE NETWORKS |
Dr. Thierry Nieus |
| 06/06/2024 |
The molecular interactions that shape tau in disease |
Lukasz Joachimiak |
| 06/06/2024 |
RNA-RBP condensates - A tango to organize the intracellular milleu |
Shovamayee Maharana |
| 16/10/2024 |
GlycoSHIELD an integrated approach towards structural glycobiology |
Prof. Shang-Te Danny Hsu |
| 17/01/2025 |
Analyses of conduction and selectivity in potassium channels by Markov Models based on Molecular Dynamics simulations |
Prof. Simone Furini |
| 10/09/2924 |
Molecular simulations for molecular design |
Prof. Giorgio Colombo |
PhD Courses:
| Starting Date |
Ending Date |
Title |
Place |
| 09/01/2023 |
31/01/2023 |
Biostatistics for Molecular and Cellular Biology |
Department of Biosciences - UniMi |
| 07/02/2023 |
08/02/2023 |
Introduzione all’ Open Science |
Online |
| 13/02/2023 |
15/02/2023 |
THE DRUG DISCOVERY PROCESS: FROM TARGET TO LEAD IDENTIFICATION |
ROOM C04, Via Mangiagalli 25 |
| 03/04/2023 |
04/04/2023 |
Open Science: riviste predatorie, pre-print e open review |
Online |
| 17/05/2023 |
18/05/2023 |
Open Science: Dati Fair |
Online |
| 28/06/2023 |
28/06/2023 |
Lezione propedeutica base su IP e brevetti |
Online |
| 10/07/2023 |
11/07/2023 |
Fondamenti di Academic Writing |
Online |
| 20/11/2023 |
24/11/2023 |
CINECA: Advanced School on HPC Computing with GPU Accelerators |
Online |
| 22/02/2024 |
22/02/2024 |
La valutazione della Sostenibilità Integrata per la Global Health |
Online |
| 22/02/2024 |
22/02/2024 |
The purpose of a phd in the knowledge economy |
Online |
| 22/02/2024 |
22/02/2024 |
The Art of Grantmanship |
Online |
| 22/02/2024 |
22/02/2024 |
La Proprietà Intellettuale e la tutela brevettuale (percorso base) |
Online |
Conferences / Workshops:
| Starting Date |
Ending Date |
Title |
Place |
| 23/03/2023 |
23/03/2023 |
One-day workshop on last advancements in protein aggregation from both computational and experimental point of view |
Department of Biosciences - UniMi |
| 24/03/2023 |
24/03/2023 |
4EU+ Training session: Open Access and Open licences |
4EU+ Training session: Open Access and Open licences |
| 27/03/2023 |
29/03/2023 |
CINECA: Introduction to Scientific and Technical Computing in C |
Online |
| 06/12/2023 |
09/12/2023 |
EMBO: Computational structural biology |
EMBL Advanced Training Centre - Heidelberg (Germany) |
Publications:
Multi-eGO: An in silico lens to look into protein aggregation kinetics at atomic resolutionEmanuele Scalone, Luca Broggini, Cristina Visentin, Davide Erba, Fran Bačić Toplek, Kaliroi Peqini, Sara Pellegrino, Stefano Ricagno, Cristina Paissoni, Carlo Camilloni
Proceedings of the National Academy of Sciences
Multi-eGO: Model Improvements toward the Study of Complex Self-Assembly ProcessesBačić Toplek, F., Scalone, E., Stegani, B., Paissoni, C., Capelli, R., & Camilloni, C.
Journal of Chemical Theory and Computation
A PDZ tandem repeat folds and unfolds via different pathwaysPennacchietti, V., di Matteo, S., Pagano, L., Toplek, F.B., Stegani, B., Toto, A., Toso, J., Puglisi, E., Capelli, R., Di Felice, M. and Malagrinò, F.
Protein Science
https://pubs.acs.org/doi/10.1021/acs.jcim.4c01545Stegani, Bruno, Emanuele Scalone, Fran Bacic Toplek, Thomas Lohr, Stefano Gianni, Michele Vendruscolo, Riccardo Capelli, and Carlo Camilloni
ACS Publications
